Long-term boron-deficiency-responsive genes revealed by cDNA-AFLP differ between Citrus sinensis roots and leaves
Identifieur interne : 000559 ( Main/Exploration ); précédent : 000558; suivant : 000560Long-term boron-deficiency-responsive genes revealed by cDNA-AFLP differ between Citrus sinensis roots and leaves
Auteurs : Yi-Bin Lu [République populaire de Chine] ; Yi-Ping Qi [République populaire de Chine] ; Lin-Tong Yang [République populaire de Chine] ; Jinwook Lee [Corée du Sud] ; Peng Guo [République populaire de Chine] ; Xin Ye [République populaire de Chine] ; Meng-Yang Jia [République populaire de Chine] ; Mei-Li Li [République populaire de Chine] ; Li-Song Chen [République populaire de Chine]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2015.
Abstract
Seedlings of
Url:
DOI: 10.3389/fpls.2015.00585
PubMed: 26284101
PubMed Central: 4517394
Affiliations:
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Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Qi, Yi Ping" sort="Qi, Yi Ping" uniqKey="Qi Y" first="Yi-Ping" last="Qi">Yi-Ping Qi</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>Institute of Materia Medica, Fujian Academy of Medical Sciences</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Yang, Lin Tong" sort="Yang, Lin Tong" uniqKey="Yang L" first="Lin-Tong" last="Yang">Lin-Tong Yang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation 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id="aff1"><institution>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Qi, Yi Ping" sort="Qi, Yi Ping" uniqKey="Qi Y" first="Yi-Ping" last="Qi">Yi-Ping Qi</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>Institute of Materia Medica, Fujian Academy of Medical Sciences</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Yang, Lin Tong" sort="Yang, Lin Tong" uniqKey="Yang L" first="Lin-Tong" last="Yang">Lin-Tong Yang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Lee, Jinwook" sort="Lee, Jinwook" uniqKey="Lee J" first="Jinwook" last="Lee">Jinwook Lee</name><affiliation wicri:level="1"><nlm:aff id="aff4"><institution>Department of Horticultural Science, Kyungpook National University</institution><country>Daegu, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Guo, Peng" sort="Guo, Peng" uniqKey="Guo P" first="Peng" last="Guo">Peng Guo</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Ye, Xin" sort="Ye, Xin" uniqKey="Ye X" first="Xin" last="Ye">Xin Ye</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Jia, Meng Yang" sort="Jia, Meng Yang" uniqKey="Jia M" first="Meng-Yang" last="Jia">Meng-Yang Jia</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Li, Mei Li" sort="Li, Mei Li" uniqKey="Li M" first="Mei-Li" last="Li">Mei-Li Li</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Chen, Li Song" sort="Chen, Li Song" uniqKey="Chen L" first="Li-Song" last="Chen">Li-Song Chen</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Department of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff5"><institution>The Higher Educational Key Laboratory of Fujian Province for Soil Ecosystem Health and Regulation, Fujian Agriculture and Forestry University</institution><country>Fuzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Plant Science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Seedlings of <italic>Citrus sinensis</italic> (L.) Osbeck were supplied with boron (B)-deficient (without H<sub>3</sub>BO<sub>3</sub>) or -sufficient (10 μM H<sub>3</sub>BO<sub>3</sub>) nutrient solution for 15 weeks. We identified 54 (38) and 38 (45) up (down)-regulated cDNA-AFLP bands (transcript-derived fragments, TDFs) from B-deficient leaves and roots, respectively. These TDFs were mainly involved in protein and amino acid metabolism, carbohydrate and energy metabolism, nucleic acid metabolism, cell transport, signal transduction, and stress response and defense. The majority of the differentially expressed TDFs were isolated only from B-deficient roots or leaves, only seven TDFs with the same GenBank ID were isolated from the both. In addition, ATP biosynthesis-related TDFs were induced in B-deficient roots, but unaffected in B-deficient leaves. Most of the differentially expressed TDFs associated with signal transduction and stress defense were down-regulated in roots, but up-regulated in leaves. TDFs related to protein ubiquitination and proteolysis were induced in B-deficient leaves except for one TDF, while only two down-regulated TDFs associated with ubiquitination were detected in B-deficient roots. Thus, many differences existed in long-term B-deficiency-responsive genes between roots and leaves. In conclusion, our findings provided a global picture of the differential responses occurring in B-deficient roots and leaves and revealed new insight into the different adaptive mechanisms of <italic>C. sinensis</italic> roots and leaves to B-deficiency at the transcriptional level.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Aleza, P" uniqKey="Aleza P">P. Aleza</name></author><author><name sortKey="Juarez, J" uniqKey="Juarez J">J. Juárez</name></author><author><name sortKey="Ollitrault, P" uniqKey="Ollitrault P">P. Ollitrault</name></author><author><name sortKey="Navarro, L" uniqKey="Navarro L">L. 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